SNP Profiles of EET 19   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._GC-08-085-2-08
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
20._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
21._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
22._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
23._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
24._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
25._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
26._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
27._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
28._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
29._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
30._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
31._GC-05-184-4-37
CCAGCGCTCTAACTGTCTCTAAAGCCAG
32._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
33._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
34._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
35._EET_19_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
36._RUQ_1630
_AGCGCT___GT____CCAG
37._EET_19_[ECU]
CCAGCGCTCTACCTGTCTCTAAAGCCAG
38._RUQ_1630
CCAGCGCTCTACCTGTCTCTAAAGCCAG
39._EET_19_[ECU]
CCAGCGCTCTACCTGTCTCTAAAGCCAG
40._RUQ_1630
__CG____GT_CT_AG_AG
41._RUQ_1630
__CG_________CC_
42._MITC-000062
GGAGCGAAAGACAGCC__AAAGGGAA
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGGAGTTCCCGGGCTAC
1._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
2._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
3._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
4._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
5._GC-05-184-4-37
TTATGGCTCTGGGGAGTTCCCGGGCTAC
6._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
7._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
8._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
9._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
10._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
11._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
12._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
13._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
14._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
15._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
16._GC-08-085-2-08
TTATGGCTCTGGGGAGTTCCCGGGCTAC
17._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
18._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
19._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
20._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
21._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
22._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
23._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
24._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
25._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
26._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
27._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
28._GC-05-184-4-37
TTATGGCTCTGGGGAG_CCCGGGCTAC
29._GC-05-184-4-37
TTATGGCTCTGGGGAGTTCCCGGGCT_
30._GC-05-184-4-37
TTATGGCTCTGGGGAGTTCCCGGGCT_
31._GC-05-184-4-37
TTATGGCTCTGGGGAGTTCCCGGGCT_
32._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCT_
33._EET_19_[ECU]
TTATGGCTCTGGGGAG_CCCGGGCTAC
34._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCT_
35._EET_19_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCT_
36._RUQ_1630
____TTGGGG_TTCCCGGGCTAC
37._EET_19_[ECU]
TTATGGCTCTGGGGGGTTCCCGGGCTAC
38._RUQ_1630
TTATGGCTCTGGGGGGTTCCCGGGCTAC
39._EET_19_[ECU]
TTATGGCTCTGGGGGGTTCCCGGGCTAC
40._RUQ_1630
_____GGGGGG_CCCG__AC
41._RUQ_1630
TT___CTCC___CCCG___
42._MITC-000062
AGATGGAGAGCGCC_GGCCCGAC_AC
 293031323334353637383940  
_Input profile
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
1._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
2._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
3._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
4._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
5._GC-05-184-4-37
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
6._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
7._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
8._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
9._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
10._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
11._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
12._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
13._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
14._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
15._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
16._GC-08-085-2-08
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
17._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
18._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
19._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
20._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
21._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
22._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
23._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
24._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
25._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
26._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
27._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
28._GC-05-184-4-37
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
29._GC-05-184-4-37
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
30._GC-05-184-4-37
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
31._GC-05-184-4-37
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
32._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
33._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
34._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
35._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
36._RUQ_1630
GG_ATCCAGCCCCCTGTCC__X_XX_X
37._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
38._RUQ_1630
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
39._EET_19_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
40._RUQ_1630
____AG____CC__X_XX_X
41._RUQ_1630
__AT_AGGGCCCT_CC__X_XX_X
42._MITC-000062
_AGATAGAACGCCAACCCCATCGX_XX_X

Input profile: EET_19_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

1._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

16._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

18._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

19._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

20._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

21._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

22._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

23._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

24._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

25._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

26._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

27._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

28._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

29._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

31._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

33._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

34._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

35._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

36._EET_19_[ECU] RUQ_1630

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_19_[ECU]

97.5 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

38._EET_19_[ECU] RUQ_1630

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._EET_19_[ECU]

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

41._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

50 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25